P.Andrew Karplus: search on Z-Library

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1

Molecular dynamics simulations of biomolecules

Karplus, Martin, McCammon, J. Andrew

Journal:

Natural Structural Biology

Year:

2002

Language:

english

File:

PDF, 1.09 MB

english, 2002

2

Site-Directed Mutagenesis Improves Catalytic Efficiency and Thermostability of Escherichia coli pH 2.5 Acid Phosphatase/Phytase Expressed in Pichia pastoris

Eric Rodriguez, Zachary A Wood, P.Andrew Karplus, Xin Gen Lei

Journal:

Archives of Biochemistry and Biophysics

Year:

2000

Language:

english

File:

PDF, 141 KB

english, 2000

3

Structural comparisons among the short-chain helical cytokines

Denise A Rozwarski, Angela M Gronenborn, G.Marius Clore, J.Fernando Bazan, Andrew Bohm, Alexander Wlodawer, Marcos Hatada, P.Andrew Karplus

Journal:

Year:

1994

Language:

english

File:

PDF, 1.81 MB

english, 1994

4

Imaging of Multicellular Large-Scale Rhythmic Calcium Waves during Zebrafish Gastrulation

Edwin Gilland, Andrew L. Miller, Eric Karplus, Robert Baker and Sarah E. Webb

Journal:

Proceedings of the National Academy of Sciences

Year:

1999

Language:

english

File:

PDF, 1.82 MB

english, 1999

5

The dynamic picture of protein structure

McCammon, J. Andrew, Karplus, Martin

Journal:

Accounts of Chemical Research

Year:

1983

Language:

english

File:

PDF, 970 KB

english, 1983

6

The Internal Dynamics of Globular Protein

Karplus, Martin, McCammon, J. Andrew, Peticolas, Warner L.

Journal:

Critical Reviews in Biochemistry and Molecular Biology

Year:

1981

Language:

english

File:

PDF, 4.49 MB

english, 1981

7

Dynamics of folded proteins

McCammon, J. Andrew, Gelin, Bruce R., Karplus, Martin

Journal:

Year:

1977

File:

PDF, 622 KB

1977

8

A fresh look at the Ramachandran plot and the occurrence of standard structures in proteins

Hollingsworth, Scott A., Karplus, P. Andrew

Journal:

BioMolecular Concepts

Year:

2010

Language:

english

File:

PDF, 860 KB

english, 2010

9

Internal mobility of ferrocytochrome c

Northrup, Scott H., Pear, Michael R., McCammon, J. Andrew, Karplus, Martin, Takano, Tsunehiro

Journal:

Year:

1980

File:

PDF, 237 KB

1980

10

Localized Calcium Transients Accompany Furrow Positioning, Propagation, and Deepening during the Early Cleavage Period of Zebrafish Embryos

Sarah E. Webb, Karen W. Lee, Eric Karplus, Andrew L. Miller

Journal:

Developmental Biology

Year:

1997

Language:

english

File:

PDF, 5.39 MB

english, 1997

11

Catalytic Cycle of Human Glutathione Reductase Near 1 Å Resolution

Donald S. Berkholz, H. Richard Faber, Savvas N. Savvides, P. Andrew Karplus

Journal:

Journal of Molecular Biology

Year:

2008

Language:

english

File:

PDF, 1.37 MB

english, 2008

12

Molecular dynamics of ferrocytochrome c

Northrup, Scott H., Pear, Michael R., McCammon, J. Andrew, Karplus, Martin

Journal:

Year:

1980

File:

PDF, 253 KB

1980

13

PROTEIN SULFENIC ACIDS IN REDOX SIGNALING

Karplus, P. Andrew, Claiborne, Al, Poole, Leslie B.

Journal:

Annual Review of Pharmacology

Year:

2004

Language:

english

File:

PDF, 884 KB

english, 2004

14

Demonstration by NMR of folding domains in lysozyme

Miranker, Andrew, Radford, Sheena E., Karplus, Martin, Dobson, Christopher M.

Journal:

Year:

1991

File:

PDF, 637 KB

1991

15

Structural Aspects of Plant Ferredoxin : NADP+Oxidoreductases

P. Andrew Karplus, H. Richard Faber

Journal:

Photosynthesis Research

Year:

2004

Language:

english

File:

PDF, 462 KB

english, 2004

16

Analysis of the Link between Enzymatic Activity and Oligomeric State in AhpC, a Bacterial Peroxiredoxin †,‡

Parsonage, Derek, Youngblood, Derek S., Sarma, Ganapathy N., Wood, Zachary A., Karplus, P. Andrew, Poole, Leslie B.

Journal:

Year:

2005

Language:

english

File:

PDF, 570 KB

english, 2005

17

Observed octameric assembly of a Plasmodium yoelii peroxiredoxin can be explained by the replacement of native “ball-and-socket” interacting residues by an affinity tag

Gretes, Michael C., Karplus, P. Andrew

Journal:

Protein Science

Year:

2013

Language:

english

File:

PDF, 495 KB

english, 2013

18

Backbone Dynamics and Chemical Exchange of Peroxiredoxin Q from Xanthamonas campestris

Estelle, Aidan, Reardon, Patrick N., Pinckney, Seth, Karplus, Andrew, Barbar, Elisar J.

Journal:

Biophysical Journal

Year:

2020

File:

PDF, 48 KB

2020

19

Involvement of Serine 96 in the Catalytic Mechanism of Ferredoxin-NADP+ Reductase: Structure-Function Relationship As Studied by Site-Directed Mutagenesis and X-ray Crystallography

Aliverti, Alessandro, Bruns, Christopher M., Pandini, Vittorio E., Karplus, P. Andrew, Vanoni, Maria A., Curti, Bruno, Zanetti, Giuliana

Journal:

Year:

1995

Language:

english

File:

PDF, 1.03 MB

english, 1995

20

Self-masking in an Intact ERM-merlin Protein: An Active Role for the Central α-Helical Domain

Qianzhi Li, Mark R. Nance, Rima Kulikauskas, Kevin Nyberg, Richard Fehon, P. Andrew Karplus, Anthony Bretscher, John J.G. Tesmer

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 2.63 MB

english, 2007

21

Structure of Coenzyme A−Disulfide Reductase from Staphylococcus aureus at 1.54 Å Resolution †,‡

Mallett, T. Conn, Wallen, Jamie R., Karplus, P. Andrew, Sakai, Hiroaki, Tsukihara, Tomitake, Claiborne, Al

Journal:

Year:

2006

Language:

english

File:

PDF, 1.26 MB

english, 2006

22

Conformational Analysis of a Stereochemically Complete Set of Cis-enediol Peptide Analogues

Michielin, Olivier, Zoete, Vincent, Gierasch, Tiffany Malinky, Eckstein, Jens, Napper, Andrew, Verdine, Gregory, Karplus, Martin

Journal:

Journal of the American Chemical Society

Year:

2002

Language:

english

File:

PDF, 512 KB

english, 2002

23

Radial Velocity and Wind Measurement with NIMA–NWCA: Comparisons with Human Estimation and Aircraft Measurements

Cohn, Stephen A., Goodrich, Robert K., Morse, Corinne S., Karplus, Eli, Mueller, Steven W., Cornman, Larry B., Weekley, R. Andrew

Journal:

Journal of Applied Meteorology

Year:

2001

Language:

english

File:

PDF, 708 KB

english, 2001

24

Automated NMR resonance assignments and structure determination using a minimal set of 4D spectra

Evangelidis, Thomas, Nerli, Santrupti, Nováček, Jiří, Brereton, Andrew E., Karplus, P. Andrew, Dotas, Rochelle R., Venditti, Vincenzo, Sgourakis, Nikolaos G., Tripsianes, Konstantinos

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 1.69 MB

english, 2018

25

Isolation of Legume Glycosyltransferases and Active Site Mapping of thePhaseolus lunatusZeatin O-glucosyltransferase ZOG1

Laura Meek, Ruth C. Martin, Xueyan Shan, P. Andrew Karplus, David W. S. Mok, Machteld C. Mok

Journal:

Journal of Plant Growth Regulation

Year:

2008

Language:

english

File:

PDF, 531 KB

english, 2008

26

Structure-based Insights into the Catalytic Power and Conformational Dexterity of Peroxiredoxins

Hall, Andrea, Nelson, Kimberly, Poole, Leslie B., Karplus, P. Andrew

Journal:

Antioxidants & Redox Signaling

Year:

2011

Language:

english

File:

PDF, 2.03 MB

english, 2011

27

70 Years of Crystalline Urease: What Have We Learned?

Karplus, P. Andrew, Pearson, Matthew A., Hausinger, Robert P.

Journal:

Accounts of Chemical Research

Year:

1997

Language:

english

File:

PDF, 223 KB

english, 1997

28

Structure of a Sedoheptulose 7-Phosphate Cyclase: ValA from Streptomyces hygroscopicus

Kean, Kelsey M., Codding, Sara J., Asamizu, Shumpei, Mahmud, Taifo, Karplus, P. Andrew

Journal:

Year:

2014

Language:

english

File:

PDF, 9.38 MB

english, 2014

29

Crystal structure of the catalytic domain of a thermophilic endocellulase

Spezio, Michael, Wilson, David B., Karplus, P. Andrew

Journal:

Year:

1993

Language:

english

File:

PDF, 4.13 MB

english, 1993

30

Immobilization of Proteins with Controlled Load and Orientation

Bednar, Riley, Golbek, Thaddeus W., Kean, Kelsey Marie, Brown, Wesley J., Jana, Subhashis, Baio, Joe E., Karplus, Paul Andrew, Mehl, Ryan A.

Journal:

ACS Applied Materials & Interfaces

Year:

2019

Language:

english

File:

PDF, 843 KB

english, 2019

31

Enzyme inactivation through sulfhydryl oxidation by physiologic NO-carriers

Becker, Katja, Savvides, Savvas N., Keese, Michael, Schirmer, R. Heiner, Karplus, P. Andrew

Journal:

Natural Structural Biology

Year:

1998

File:

PDF, 781 KB

1998

32

Structures of Cys319 Variants and Acetohydroxamate-Inhibited Klebsiella aerogenes Urease †,‡

Pearson, Matthew A., Michel, Linda Overbye, Hausinger, Robert P., Karplus, P. Andrew

Journal:

Year:

1997

Language:

english

File:

PDF, 232 KB

english, 1997

33

Peroxiredoxins: guardians against oxidative stress and modulators of peroxide signaling

Perkins, Arden, Nelson, Kimberly J., Parsonage, Derek, Poole, Leslie B., Karplus, P. Andrew

Journal:

Trends in Biochemical Sciences

Year:

2015

Language:

english

File:

PDF, 1.83 MB

english, 2015

34

The Arg-Gly-Asp–Containing, Solvent-Exposed Loop of Ptr ToxA Is Required for Internalization

Manning, Viola A., Hamilton, Sara M., Karplus, P. Andrew, Ciuffetti, Lynda M.

Journal:

Molecular Plant-Microbe Interactions

Year:

2008

Language:

english

File:

PDF, 681 KB

english, 2008

35

Substrate Specificity in Thiol Dioxygenases

Aloi, Sekotilani, Davies, Casey G., Karplus, P. Andrew, Wilbanks, Sigurd M., Jameson, Guy N. L.

Journal:

Year:

2019

Language:

english

File:

PDF, 3.11 MB

english, 2019

36

Backbone makes a significant contribution to the electrostatics of α/β-barrel proteins

Soumya Raychaudhuri, Fayyaz Younas, P. Andrew Karplus, Carlos H. Faerman, Daniel R. Ripoll

Journal:

Protein Science

Year:

1997

Language:

english

File:

PDF, 8.11 MB

english, 1997

37

Polysaccharide hydrolase folds diversity of structure and convergence of function

Michael E. Himmel, P. Andrew Karplus, Joshua Sakon, Willam S. Adney, John O. Baker, Steven R. Thomas

Journal:

Applied Biochemistry and Biotechnology

Year:

1997

Language:

english

File:

PDF, 1.24 MB

english, 1997

38

Iron-containing urease in a pathogenic bacterium

Eric L. Carter, Dale E. Tronrud, Scott R. Taber, P. Andrew Karplus and Robert P. Hausinger

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 928 KB

english, 2011

39

Experimentally Dissecting the Origins of Peroxiredoxin Catalysis

Nelson, Kimberly J., Perkins, Arden, Van Swearingen, Amanda E.D., Hartman, Steven, Brereton, Andrew E., Parsonage, Derek, Salsbury, Freddie R., Karplus, P. Andrew, Poole, Leslie B.

Journal:

Antioxidants & Redox Signaling

Year:

2017

Language:

english

File:

PDF, 1.61 MB

english, 2017

40

The sedoheptulose 7-phosphate cyclases and their emerging roles in biology and ecology

Osborn, Andrew R., Kean, Kelsey M., Karplus, P. Andrew, Mahmud, Taifo

Journal:

Natural Product Reports

Year:

2017

Language:

english

File:

PDF, 1.49 MB

english, 2017

41

Overcoming Near-Cognate Suppression in a Release Factor 1-Deficient Host with an Improved Nitro-Tyrosine tRNA Synthetase

Beyer, Jenna N., Hosseinzadeh, Parisa, Gottfried-Lee, Ilana, Van Fossen, Elise M., Zhu, Phillip, Bednar, Riley M., Karplus, P. Andrew, Mehl, Ryan A., Cooley, Richard B.

Journal:

Journal of Molecular Biology

Year:

2020

File:

PDF, 2.17 MB

2020

42

The hinge-bending mode of a lysozyme–inhibitor complex

Robert E. Bruccoleri, Martin Karplus, J. Andrew McCammon

Journal:

Year:

1986

Language:

english

File:

PDF, 1.55 MB

english, 1986

43

A crystallographic study of the glutathione binding site of glutathione reductase at 0.3-nm resolution

P. Andrew KARPLUS, Emil F. PAI, Georg E. SCHULZ

Journal:

Year:

1989

Language:

english

File:

PDF, 1.06 MB

english, 1989

44

Structural Characterization of Zinc-deficient Human Superoxide Dismutase and Implications for ALS

Blaine R. Roberts, John A. Tainer, Elizabeth D. Getzoff, Dean A. Malencik, Sonia R. Anderson, Valerie C. Bomben, Kathrin R. Meyers, P. Andrew Karplus, Joseph S. Beckman

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 1.79 MB

english, 2007

45

Redox-Dependent Dynamics of a Dual Thioredoxin Fold Protein: Evolution of Specialized Folds

Hall, Andrea, Parsonage, Derek, Horita, David, Karplus, P. Andrew, Poole, Leslie B., Barbar, Elisar

Journal:

Year:

2009

Language:

english

File:

PDF, 3.30 MB

english, 2009

46

Rationally engineered flavin-dependent oxidase reveals steric control of dioxygen reduction

Zafred, Domen, Steiner, Barbara, Teufelberger, Andrea R., Hromic, Altijana, Karplus, P. Andrew, Schofield, Christopher J., Wallner, Silvia, Macheroux, Peter

Journal:

Year:

2015

Language:

english

File:

PDF, 1.17 MB

english, 2015

47

Structural prototypes for an extended family of flavoprotein reductases: Comparison of phthalate dioxygenase reductase with ferredoxin reductase and ferredoxin

Carl C. Correll, Martha L. Ludwig, Christopher M. Bruns, P. Andrew Karplus

Journal:

Protein Science

Year:

1993

Language:

english

File:

PDF, 5.70 MB

english, 1993

48

Urease activity in the crystalline state

Mary Beth C. Moncrief, Robert P. Hausinger, Louis G. Hom, Evelyn Jabri, P. Andrew Karplus

Journal:

Protein Science

Year:

1995

Language:

english

File:

PDF, 288 KB

english, 1995

49

Structure and mechanism of endo/exocellulase E4 from Thermomonospora fusca

Sakon, Joshua, Irwin, Diana, Wilson, David B., Karplus, P. Andrew

Journal:

Natural Structural Biology

Year:

1997

File:

PDF, 1.14 MB

1997

50

Erratum

Jianpeng Ma, Terence C Flynn, Qiang Cui, Andrew G.W Leslie, John E Walker, Martin Karplus

Journal:

Year:

2002

File:

PDF, 72 KB

2002

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